In the programs related to FOLD, the second region, the ________ region, is used to calculate the energy of the ________ structure.

In the programs related to FOLD, the second region, the ________ regi

1.	In the programs related to FOLD, the second region, the ________ region, is used to calculate the energy of the ________ structure.
A.	included, most likely
B.	included, best
C.	excluded, least likely
D.	excluded, best
Answer» E.

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A_LIMITATION_OF_THE_ZUKER_METHOD_AND_OTHER_METHODS_(NAKAYA_ET_AL._1995)_FOR_COMPUTING_SUBOPTIMAL_RNA_STRUCTURES_IS_THAT_THEY_DO_NOT_COMPUTE_ALL_THE_STRUCTURES_WITHIN_A_GIVEN_ENERGY_RANGE_OF_THE_MINIMUM_FREE-ENERGY_STRUCTURE.?$
These_limitations_of_the_Zuker_method_and_other_methods_have_been_largely_overcome_by_using_an_algorithm_originally_described_by_Waterman_and_Byers_(1985)_for_finding_sequence_alignments_within_a_certain_range_of_the_optimal_one_by_modifications_of_the_trace-back_procedure_used_in_dynamic_programming.$
Three scores, Pnum (i), Hnum (i,j), and Ssum, have been derived to assist with a determination of the reliability of a secondary structure prediction for a particular base i or a base pair i,j.

In the programs related to FOLD, the second region, the region, is used to calculate the energy of the structure.

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